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Calculation of the Euclidean distance between the two matrices, Including script files and function files in the form, ML estimation method can be a good signal to noise ratio.
tRNAscan-SE was written in the PERL (version 5.0) script language. Input consists of DNA or RNA sequences in FASTA format. tRNA predictions are output in standard tabular or ACeDB format. tRNAscan-SE does no tRNA detection itself, but instead combines the strengths of three independent tRNA prediction programs by negotiating the flow of information between them, performing a limited amount of post-processing, and outputting the results in one of several formats.
Book in PDF, Programming Perl 2nd Edition